#include <plasma.hpp>

Collaboration diagram for Plasma:

Classes
struct	DecomposedRecalculableF0Arrays

Public Types
enum	DevicePtlOpt { UseDevicePtl =0, NoDevicePtl }

enum	ParticleType { Electrons =0, Ions }

Public Member Functions
	Plasma ()

	Plasma (NLReader::NamelistReader &nlr, const Grid< DeviceType > &grid, const MagneticField< DeviceType > &magnetic_field, const DomainDecomposition< DeviceType > &pol_decomp, const VelocityGrid &vgrid)

template<typename F >
void	for_all_species (F func, DevicePtlOpt device_ptl_opt=UseDevicePtl)

template<typename F >
void	for_all_nonadiabatic_species (F func, DevicePtlOpt device_ptl_opt=UseDevicePtl)

template<typename F >
void	for_electrons (F func, DevicePtlOpt device_ptl_opt=UseDevicePtl)

template<typename F >
void	for_all_ions (F func, DevicePtlOpt device_ptl_opt=UseDevicePtl)

template<typename F >
void	for_all (ParticleType particle_type, F func, DevicePtlOpt device_ptl_opt=UseDevicePtl)

template<typename F >
void	for_one_species (int isp, F func, DevicePtlOpt device_ptl_opt=UseDevicePtl)

template<typename F >
bool	true_for_some_species (F func) const

template<typename F >
bool	true_for_all_species (F func) const

bool	electrons_are_adiabatic () const

bool	f0_grid () const

int	largest_n_ptl (bool check_backup)

void	deallocate_device_ptl ()

void	update_decomposed_f0_calculations (const DomainDecomposition< DeviceType > &pol_decomp, const Grid< DeviceType > &grid, const MagneticField< DeviceType > &magnetic_field, const VelocityGrid &vgrid)

void	remap_f0_f0g (const DomainDecomposition< DeviceType > &pol_decomp)

void	validate_f0_checkpoint_file_dims (const XGC_IO_Stream &stream, const Grid< DeviceType > &grid, const VelocityGrid &vgrid)

void	write_checkpoint_files (const Grid< DeviceType > &grid, const DomainDecomposition< DeviceType > &pol_decomp, const XGC_IO_Stream &stream)

void	read_checkpoint_files (const Grid< DeviceType > &grid, const VelocityGrid &vgrid, const DomainDecomposition< DeviceType > &pol_decomp, const XGC_IO_Stream &stream, const XGC_IO_Stream &f0_stream, bool n_ranks_is_same, int version)

double	get_main_ion_toroidal_transit_time (const MagneticField< DeviceType > &magnetic_field) const

void	read_initial_distribution_all (NLReader::NamelistReader &nlr, const DomainDecomposition< DeviceType > &pol_decomp)

bool	electrons_are_reduced_deltaf () const

Static Public Member Functions
static std::vector < MemoryPrediction >	estimate_memory_usage (NLReader::NamelistReader &nlr, const Grid< DeviceType > &grid, const DomainDecomposition< DeviceType > &pol_decomp)

Public Attributes
std::vector< Species < DeviceType > >	all_species
	Every particle species in the simulation. More...

VGridDistribution< HostType >	f0_f0g

View< double *, CLayout, HostType >	f0_node_cost

DecomposedRecalculableF0Arrays	decomposed_recalculable_f0_arrays
	Contains f0 values that are poloidally decomposed but don't need to be transferred between ranks during load rebalancing. More...

View< double **, CLayout, HostType >	f0_delta_n
	Flux-surface averaged change of density. More...

View< double **, CLayout, HostType >	f0_delta_u
	Flux-surface averaged change of parallel flow. More...

View< double **, CLayout, HostType >	f0_delta_T
	Flux-surface averaged change of temperature. More...

View< double *, CLayout, HostType >	spitzer_resistivity

int	nspecies
	Number of species including electrons. More...

int	n_nonadiabatic_species
	Number of nonadiabatic species. More...

std::vector< std::string >	sp_names

Private Member Functions
void	initialize_spitzer_res ()

void	init_global_f0_arrays (const Grid< DeviceType > &grid, const MagneticField< DeviceType > &magnetic_field)

template<typename T_in , typename T_out >
void	set_unmanaged_f0_species_view (const T_in &view_in, int isp, T_out &view_out)

void	transfer_particles_d_ownership (int isp)

void	manage_particle_ownership (int isp, DevicePtlOpt device_ptl_opt)

Private Attributes
bool	species_share_particles_d_ownership
	Whether to use the device particles sharing scheme. More...

bool	particles_d_has_owner
	Whether a species owns the device particles allocation. More...

int	particles_d_owner
	Which species, if any, owns the device particles allocation. More...

double	main_ion_characteristic_energy

Member Enumeration Documentation

enum Plasma::DevicePtlOpt

Enumerator
UseDevicePtl
NoDevicePtl

enum Plasma::ParticleType

Enumerator
Electrons
Ions

Constructor & Destructor Documentation

Plasma::Plasma ( )

inline

Plasma::Plasma	(	NLReader::NamelistReader &	nlr,
		const Grid< DeviceType > &	grid,
		const MagneticField< DeviceType > &	magnetic_field,
		const DomainDecomposition< DeviceType > &	pol_decomp,
		const VelocityGrid &	vgrid
	)

< Characteristic ion energy (keV) –> controls reference time (toroidal ion transit time)

Member Function Documentation

void Plasma::deallocate_device_ptl ( )

inline

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bool Plasma::electrons_are_adiabatic ( ) const

inline

bool Plasma::electrons_are_reduced_deltaf ( ) const

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std::vector< MemoryPrediction > Plasma::estimate_memory_usage	(	NLReader::NamelistReader &	nlr,
		const Grid< DeviceType > &	grid,
		const DomainDecomposition< DeviceType > &	pol_decomp
	)

static

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bool Plasma::f0_grid ( ) const

inline

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template<typename F >

void Plasma::for_all	(	ParticleType	particle_type,
		F	func,
		DevicePtlOpt	device_ptl_opt = `UseDevicePtl`
	)

inline

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template<typename F >

void Plasma::for_all_ions	(	F	func,
		DevicePtlOpt	device_ptl_opt = `UseDevicePtl`
	)

inline

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template<typename F >

void Plasma::for_all_nonadiabatic_species	(	F	func,
		DevicePtlOpt	device_ptl_opt = `UseDevicePtl`
	)

inline

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template<typename F >

void Plasma::for_all_species	(	F	func,
		DevicePtlOpt	device_ptl_opt = `UseDevicePtl`
	)

inline

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template<typename F >

void Plasma::for_electrons	(	F	func,
		DevicePtlOpt	device_ptl_opt = `UseDevicePtl`
	)

inline

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template<typename F >

void Plasma::for_one_species	(	int	isp,
		F	func,
		DevicePtlOpt	device_ptl_opt = `UseDevicePtl`
	)

inline

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double Plasma::get_main_ion_toroidal_transit_time ( const MagneticField< DeviceType > & magnetic_field ) const

inline

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void Plasma::init_global_f0_arrays	(	const Grid< DeviceType > &	grid,
		const MagneticField< DeviceType > &	magnetic_field
	)

inlineprivate

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void Plasma::initialize_spitzer_res ( )

private

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int Plasma::largest_n_ptl ( bool check_backup )

inline

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void Plasma::manage_particle_ownership	(	int	isp,
		DevicePtlOpt	device_ptl_opt
	)

inlineprivate

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void Plasma::read_checkpoint_files	(	const Grid< DeviceType > &	grid,
		const VelocityGrid &	vgrid,
		const DomainDecomposition< DeviceType > &	pol_decomp,
		const XGC_IO_Stream &	stream,
		const XGC_IO_Stream &	f0_stream,
		bool	n_ranks_is_same,
		int	version
	)

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void Plasma::read_initial_distribution_all	(	NLReader::NamelistReader &	nlr,
		const DomainDecomposition< DeviceType > &	pol_decomp
	)

inline

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void Plasma::remap_f0_f0g ( const DomainDecomposition< DeviceType > & pol_decomp )

inline

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template<typename T_in , typename T_out >

void Plasma::set_unmanaged_f0_species_view	(	const T_in &	view_in,
		int	isp,
		T_out &	view_out
	)

inlineprivate

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void Plasma::transfer_particles_d_ownership ( int isp )

inlineprivate

template<typename F >

bool Plasma::true_for_all_species ( F func ) const

inline

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template<typename F >

bool Plasma::true_for_some_species ( F func ) const

inline

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void Plasma::update_decomposed_f0_calculations	(	const DomainDecomposition< DeviceType > &	pol_decomp,
		const Grid< DeviceType > &	grid,
		const MagneticField< DeviceType > &	magnetic_field,
		const VelocityGrid &	vgrid
	)

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void Plasma::validate_f0_checkpoint_file_dims	(	const XGC_IO_Stream &	stream,
		const Grid< DeviceType > &	grid,
		const VelocityGrid &	vgrid
	)

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void Plasma::write_checkpoint_files	(	const Grid< DeviceType > &	grid,
		const DomainDecomposition< DeviceType > &	pol_decomp,
		const XGC_IO_Stream &	stream
	)

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Member Data Documentation

std::vector<Species<DeviceType> > Plasma::all_species

Every particle species in the simulation.

DecomposedRecalculableF0Arrays Plasma::decomposed_recalculable_f0_arrays

Contains f0 values that are poloidally decomposed but don't need to be transferred between ranks during load rebalancing.

View<double**,CLayout, HostType> Plasma::f0_delta_n

Flux-surface averaged change of density.

View<double**,CLayout, HostType> Plasma::f0_delta_T

Flux-surface averaged change of temperature.

View<double**,CLayout, HostType> Plasma::f0_delta_u

Flux-surface averaged change of parallel flow.

VGridDistribution<HostType> Plasma::f0_f0g

View<double*,CLayout,HostType> Plasma::f0_node_cost

double Plasma::main_ion_characteristic_energy

private

int Plasma::n_nonadiabatic_species

Number of nonadiabatic species.

int Plasma::nspecies

Number of species including electrons.

bool Plasma::particles_d_has_owner

private

Whether a species owns the device particles allocation.

int Plasma::particles_d_owner

private

Which species, if any, owns the device particles allocation.

std::vector<std::string> Plasma::sp_names

bool Plasma::species_share_particles_d_ownership

private

Whether to use the device particles sharing scheme.

View<double*,CLayout, HostType> Plasma::spitzer_resistivity

The documentation for this class was generated from the following files:

/u/gitlab-xgc/builds/YGMz2TJ8/0/xgc/XGC-Devel/XGC_core/cpp/plasma.hpp
/u/gitlab-xgc/builds/YGMz2TJ8/0/xgc/XGC-Devel/XGC_core/cpp/plasma.cpp

Classes

Public Types

Public Member Functions

Static Public Member Functions

Public Attributes

Private Member Functions

Private Attributes

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation