field_following_coordinates.hpp

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#ifndef FIELD_FOLLOWING_COORDINATES_HPP
#define FIELD_FOLLOWING_COORDINATES_HPP

#include "my_subview.hpp"
#include "grid.hpp"
#include "grid_field.hpp"


class FieldFollowingCoordinates{
    View<int**,CLayout,DeviceType> tr;
    View<double***,CLayout,DeviceType> p;

    // View for temporarily storing result data for in-place conversions
    View<double**,CLayout,DeviceType> result;

    public:

    FieldFollowingCoordinates(){}

    FieldFollowingCoordinates(const Projection<HostType>& projection)
        : tr(NoInit("tr"),projection.tr.layout()),
          p(NoInit("p"),projection.p.layout()),
          result(NoInit("result"),tr.layout())
    {
        // Copy grid conversion info to device
        Kokkos::deep_copy(tr, projection.tr);
        Kokkos::deep_copy(p, projection.p);
    }

    /* Conversion from field-following coordinates to toroidal coordinates
     * @param[in] grid is the Grid object needed here to map elements to nodes
     * @param[in] input is the array one wants to convert
     * @param[out] output is the resulting converted array
     * */
    void cnvt_grid_ff2real(const Grid<DeviceType>& grid, const View<double**,CLayout,DeviceType>& input, const View<double**,Kokkos::LayoutRight,DeviceType>& output) const{
        // Check the input and output views are the correct size
        if(input.extent(0) != 2 || input.extent(1) != grid.nnode ||
           output.extent(0)!= 2 || output.extent(1)!= grid.nnode  ) exit_XGC("\nError in cnvt_grid_ff2real: Unexpected View sizes. \n");

        // Initialize output to zero
        Kokkos::deep_copy(output, 0.0);

        // Initialize vol to zero
        View<double**,CLayout,DeviceType> vol("vol",input.layout());

        // Copy grid%node_vol_ff from fortran
        View<double**,CLayout,DeviceType> node_vol_ff(NoInit("node_vol_ff"),input.layout());
        Kokkos::deep_copy(node_vol_ff, grid.volumes_and_areas.node_vol_ff_h);

        // Make a (SHALLOW) copy so the lambda doesn't have to implicitly capture *this
        FieldFollowingCoordinates ff = *this;

        // for all node point of ff
        Kokkos::parallel_for("cnvt_grid_ff2real", Kokkos::RangePolicy<ExSpace>(0,grid.nnode), KOKKOS_LAMBDA( const int i ){
            for (int dir=0;dir<2;dir++){
                for (int j=0;j<3;j++){
                    // node and weight
                    int nd=grid.get_node_index(ff.tr(dir,i), j);
                    double wt=ff.p(dir,i,j)*node_vol_ff(dir,nd);

                    // accumulate values
                    Kokkos::atomic_add(&(output(dir,nd)), wt*input(dir,i));
                    Kokkos::atomic_add(&(vol(dir,nd)), wt);
                }
            }
        });

        // Normalize to vol
        Kokkos::parallel_for("cnvt_grid_ff2real_norm", Kokkos::RangePolicy<ExSpace>(0,grid.nnode), KOKKOS_LAMBDA( const int i ){
            for (int dir=0;dir<2;dir++){
                if(vol(dir, i) == 0.0){
                    output(dir, i) = 0.0;
                }else{
                    output(dir, i) /= vol(dir, i);
                }
            }   
        });

        // fill empty area --- replace nan values
        Kokkos::parallel_for("cnvt_grid_ff2real_fillempty", Kokkos::RangePolicy<ExSpace>(0,grid.nnode), KOKKOS_LAMBDA( const int i ){
            for (int dir=0; dir<2; dir++){
                if(vol(dir,i)==0.0){
                    int cdir = 1-dir;
                    output(dir,i)=0.0;
                    for (int j=0;j<3;j++){
                        int nd=grid.get_node_index(ff.tr(cdir,i), j);
                        double wt=ff.p(cdir,i,j);

                        // obtain interpolated values
                        output(dir,i) += wt*input(dir,nd);
                    }
                }
            }
        });
        Kokkos::fence();
    }

    /* Conversion from field-following coordinates to real coordinates when views are on host
     * User also provides a temporary device allocation
     * @param[in] grid is the Grid object needed here to map elements to nodes
     * @param[in] input is the array one wants to convert
     * @param[out] output is the resulting converted array
     * @param[in] tmp is an array with the same size as input/output used for temporary storage
     * */
    void cnvt_grid_ff2real(const Grid<DeviceType>& grid, const View<double**,CLayout,HostType>& input, const View<double**,CLayout,HostType>& output, const View<double**,CLayout,DeviceType>& tmp) const{
        // Copy input to tmp
        Kokkos::deep_copy(tmp, input);

        // Convert
        cnvt_grid_ff2real(grid, tmp, result);

        // Copy to output
        Kokkos::deep_copy(output, result);
    }

    /* Conversion from real coordinates to field-following coordinates
     * @param[in] grid is the Grid object needed here to map elements to nodes
     * @param[in] input is the array one wants to convert
     * @param[out] output is the resulting converted array
     * */    
    void cnvt_grid_real2ff(const Grid<DeviceType>& grid, const View<double**,CLayout,DeviceType>& input, const View<double**,Kokkos::LayoutRight,DeviceType>& output) const{
        // Check the input and output views are the correct size
        if(input.extent(0) != 2 || input.extent(1) != grid.nnode ||
           output.extent(0)!= 2 || output.extent(1)!= grid.nnode  ) exit_XGC("\nError in cnvt_grid_real2ff: Unexpected View sizes. \n");

        // Initialize output to zero
        Kokkos::deep_copy(output, 0.0);


        // Make a (SHALLOW) copy so the lambda doesn't have to implicitly capture *this
        FieldFollowingCoordinates ff = *this;

        Kokkos::parallel_for("cnvt_grid_real2ff", Kokkos::RangePolicy<ExSpace>(0,grid.nnode), KOKKOS_LAMBDA( const int i ){
            for (int dir=0;dir<2;dir++){
                for (int j=0;j<3;j++){
                    int nd=grid.get_node_index(ff.tr(dir,i), j);

                    double wt=ff.p(dir,i,j);

                    // obtain interpolated values
                    output(dir,i) += wt*input(dir,nd);
                }
            }
        });
        Kokkos::fence();
    }

    /* In-place conversion from real coordinates to field-following coordinates, using a buffer array to store the result temporarily
     * before copying back to the input array
     * @param[in] grid is the Grid object needed here to map elements to nodes
     * @param[inout] input is the array one wants to convert, and the resulting converted array
     * */
    void cnvt_grid_real2ff(const Grid<DeviceType>& grid, const View<double**,CLayout,DeviceType>& input) const{
        cnvt_grid_real2ff(grid, input, result);

        // Copy back to original array
        Kokkos::deep_copy(input, result);
    }

    /* Conversion from real coordinates to field-following coordinates for vectors
     * @param[in] grid is the Grid object needed here to map elements to nodes
     * @param[in] input is the array one wants to convert
     * @param[out] output is the resulting converted array
     * */
    void cnvt_grid_real2ff(const Grid<DeviceType>& grid, const View<double***,CLayout,DeviceType>& input, const View<double***,Kokkos::LayoutRight,DeviceType>& output) const{
        for(int i = 0; i<input.extent(0); i++){
            auto input_i = my_subview(input, i);
            auto output_i = my_subview(output, i);

            cnvt_grid_real2ff(grid, input_i, output_i);
        }
    }

    /* In-place conversion from real coordinates to field-following coordinates for vectors, using a buffer array to store the result temporarily
     * before copying back to the input array
     * @param[in] grid is the Grid object needed here to map elements to nodes
     * @param[inout] input is the array one wants to convert, and the resulting converted array
     * */
    void cnvt_grid_real2ff(const Grid<DeviceType>& grid, const View<double***,CLayout,DeviceType>& input)const{
        for(int i = 0; i<input.extent(0); i++){
            auto input_i = my_subview(input, i);
            cnvt_grid_real2ff(grid, input_i);
        }
    }


    /* Conversion from real coordinates to field-following coordinates from a GridField with PhiInterpType::None to a GridField with PhiInterpType::Planes.
     * This implementation could be improved. It uses the existing algorithm which requires the input to have nphi=2, so there is a lot of superfluous copying etc.  */
    void cnvt_grid_real2ff(const Grid<DeviceType>& grid, const ScalarGridField& field_in,
                                                         const GridField<DeviceType, VarType::Scalar,PhiInterpType::Planes, TorType::OnePlane, KinType::DriftKin>& field_out) const{

        // Field-following algorithm requires argument to be nphi=2, and inode as the contiguous index
        int nphi = 2;
        Kokkos::View<double**,Kokkos::LayoutRight,DeviceType> dest_view(NoInit("dest_view"), nphi, field_in.nnode());

        // Since the input is a ScalarGridField (nphi=1), copy the field into both the iphi=0 and iphi=1 indices
        field_in.copy_to_double_view(my_subview(dest_view, 0)); // iphi=0;
        field_in.copy_to_double_view(my_subview(dest_view, 1)); // iphi=1;

        // Convert to field-following
        cnvt_grid_real2ff(grid, dest_view, result);

        // Now transpose and copy into the output argument:
        field_out.transpose_copy_from_double_view(result);
    }

};

#endif