Diag3D Class Reference

#include <diag_3d.hpp>

Inheritance diagram for Diag3D:

Collaboration diagram for Diag3D:

Public Member Functions
	Diag3D ()
void	init (NLReader::NamelistReader &nlr, const Grid< DeviceType > &grid, const Plasma &plasma, int default_period)
void	write (const Grid< DeviceType > &grid, const Simulation< DeviceType > &sml, const Sheath< DeviceType > &sheath, const PerturbedBField< DeviceType > &perturbed_B_field, const DomainDecomposition< DeviceType > &pol_decomp, Plasma &plasma, const Charges &charges, const ElectricField< DeviceType > &electric_field, double time, int gstep)
void	additional (const DomainDecomposition< DeviceType > &pol_decomp, const Simulation< DeviceType > &sml, const Grid< DeviceType > &grid, const MagneticField< DeviceType > &magnetic_field, Plasma &plasma) const
void	diag_marker_den (const DomainDecomposition< DeviceType > &pol_decomp, const Grid< DeviceType > &grid, const MagneticField< DeviceType > &magnetic_field, Plasma &plasma, bool is_XGCa) const
void	calculate_E_out (const Grid< DeviceType > &grid, const ElectricField< DeviceType > &electric_field, const View< double **, CLayout, HostType > &E_grid, View< double **, CLayout, HostType > &E_out, View< double **, CLayout, HostType > &dEdt_out, double dt)
void	store_E_field (const ElectricField< DeviceType > &electric_field)
View< double **, CLayout, HostType >	calculate_B_out_base (const Grid< DeviceType > &grid, const View< double **, CLayout, HostType > &B_grid)
void	add_B_out_ptb_3db (const Grid< DeviceType > &grid, const PerturbedBField< DeviceType > &perturbed_B_field, const View< double **, CLayout, HostType > &B_out, double phi)
View< double **, CLayout, HostType >	calculate_B_out (const Simulation< DeviceType > &sml, const Grid< DeviceType > &grid, const DomainDecomposition< DeviceType > &pol_decomp, const PerturbedBField< DeviceType > &perturbed_B_field, const View< double **, CLayout, HostType > &B_grid)
Public Member Functions inherited from Diagnostic
bool	is_triggered (int step)
bool	has_been_triggered (int step)
int	get_period () const
	Diagnostic ()
void	init (const std::string &name, int period, int first_step=-1)
void	open_stream (const std::string &filename, const XGC_IO_Mode &mode)
void	close_stream ()
void	write (const XGC_IO &xgc_io)
void	start_write_step ()
bool	is_first_step ()
void	end_write_step ()

Public Attributes
bool	adios_stage
bool	weight_stats
bool	additional_moments
Public Attributes inherited from Diagnostic
bool	is_on

Private Attributes
View< double **, CLayout, HostType >	E_saved
View< double ***, CLayout, HostType >	diag_3d_add
View< double **, CLayout, HostType >	marker_den
View< double **, CLayout, HostType >	weight_mean
View< double **, CLayout, HostType >	weight_variance

Additional Inherited Members
Protected Attributes inherited from Diagnostic
StepTrigger	step_trigger

Constructor & Destructor Documentation

Diag3D()

Diag3D::Diag3D ( )

inline

Member Function Documentation

add_B_out_ptb_3db()

void Diag3D::add_B_out_ptb_3db	(	const Grid< DeviceType > &	grid,
		const PerturbedBField< DeviceType > &	perturbed_B_field,
		const View< double **, CLayout, HostType > &	B_out,
		double	phi
	)

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additional()

void Diag3D::additional	(	const DomainDecomposition< DeviceType > &	pol_decomp,
		const Simulation< DeviceType > &	sml,
		const Grid< DeviceType > &	grid,
		const MagneticField< DeviceType > &	magnetic_field,
		Plasma &	plasma
	)		const

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calculate_B_out()

View< double **, CLayout, HostType > Diag3D::calculate_B_out	(	const Simulation< DeviceType > &	sml,
		const Grid< DeviceType > &	grid,
		const DomainDecomposition< DeviceType > &	pol_decomp,
		const PerturbedBField< DeviceType > &	perturbed_B_field,
		const View< double **, CLayout, HostType > &	B_grid
	)

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calculate_B_out_base()

View< double **, CLayout, HostType > Diag3D::calculate_B_out_base	(	const Grid< DeviceType > &	grid,
		const View< double **, CLayout, HostType > &	B_grid
	)

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calculate_E_out()

void Diag3D::calculate_E_out	(	const Grid< DeviceType > &	grid,
		const ElectricField< DeviceType > &	electric_field,
		const View< double **, CLayout, HostType > &	E_grid,
		View< double **, CLayout, HostType > &	E_out,
		View< double **, CLayout, HostType > &	dEdt_out,
		double	dt
	)

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diag_marker_den()

void Diag3D::diag_marker_den	(	const DomainDecomposition< DeviceType > &	pol_decomp,
		const Grid< DeviceType > &	grid,
		const MagneticField< DeviceType > &	magnetic_field,
		Plasma &	plasma,
		bool	is_XGCa
	)		const

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init()

void Diag3D::init	(	NLReader::NamelistReader &	nlr,
		const Grid< DeviceType > &	grid,
		const Plasma &	plasma,
		int	default_period
	)

< Enable/disable Adios stage mode for xgc.3d

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store_E_field()

void Diag3D::store_E_field

(

const ElectricField< DeviceType > &

electric_field

)

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write()

void Diag3D::write	(	const Grid< DeviceType > &	grid,
		const Simulation< DeviceType > &	sml,
		const Sheath< DeviceType > &	sheath,
		const PerturbedBField< DeviceType > &	perturbed_B_field,
		const DomainDecomposition< DeviceType > &	pol_decomp,
		Plasma &	plasma,
		const Charges &	charges,
		const ElectricField< DeviceType > &	electric_field,
		double	time,
		int	gstep
	)

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Member Data Documentation

additional_moments

bool Diag3D::additional_moments

adios_stage

bool Diag3D::adios_stage

diag_3d_add

View<double***,CLayout,HostType> Diag3D::diag_3d_add

private

E_saved

View<double**,CLayout,HostType> Diag3D::E_saved

private

marker_den

View<double**,CLayout,HostType> Diag3D::marker_den

private

weight_mean

View<double**,CLayout,HostType> Diag3D::weight_mean

private

weight_stats

bool Diag3D::weight_stats

weight_variance

View<double**,CLayout,HostType> Diag3D::weight_variance

private

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The documentation for this class was generated from the following files:

• /p/test_ssd/builds/t3_84szKM/0/xgc/XGC-Devel/XGC_core/cpp/diag_3d.hpp
• /p/test_ssd/builds/t3_84szKM/0/xgc/XGC-Devel/XGC_core/cpp/diag_3d.cpp
• /p/test_ssd/builds/t3_84szKM/0/xgc/XGC-Devel/XGC_core/cpp/diag_3d_additional.cpp
• /p/test_ssd/builds/t3_84szKM/0/xgc/XGC-Devel/XGC_core/cpp/diag_marker_den.cpp