diagnosis.F90 File Reference

#include "adios_macro.h"

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Functions/Subroutines
subroutine	diagnosis (istep, irk, grid, psn, spall)
subroutine	diag_1d_output (grid, psn)
subroutine	diag_1d_f0 (grid, psn)
subroutine	get_drift_velocity (grid, psn, node, mu, vp, isp, v_th, v_mag, v_exb, v_pardrift, pot_rho, grad_psi_sqr)
	Evaluates the drift velocities at given inode, imu, ivp The basic magnetic field quantities necessary for the calculation of the magnetic drifts are stored in the grid data structure. To save memory, this could also be shifted to f0_module. More...
subroutine	diag_3d_store_field ()
subroutine	diag_3d (istep, grid, psn)
subroutine	save_as_adios_format
subroutine	diag_f0 (istep, f0_f, f0_n, iden_rho_f0, eden_f0)
subroutine	diag_3d_f0_f (istep, f0_f)
subroutine	dump_grid (grid, psn)
subroutine	dump_f0_grid (grid)
subroutine	dump_bfield (grid)
subroutine	jpar_backgnd_bicub (r, z, jpar)
subroutine	dump_poincare_init (grid, psn)
subroutine	check_adios_err (err, str)
subroutine	background_edensity0_output (grid, psn)
subroutine	background_edensity0_read (grid, psn)
subroutine	diag_heat_output
subroutine	diag_sheath (grid)
subroutine	diag_f0_df_port1 (idx, grid, spall, f0_f, f0_df0g)
	Save change of densiy, energy and momentum due to sources (collisions, neutrals, etc.) The information is gathered on the triangular grid and averaged over the toroidal direction. Extension to 3D output with toroidal resolution is possible. More...
subroutine	diag_f0_df (istep, grid)
	Outputs density, momentum and enery change due to sources (collision, neutrals, etc.) Currently, each source step is written out even if a source is not active. It would be possible to skip the output for inactive source routines to reduce the size of output files. More...
integer function	get_diag_particle_mod ()
integer function	do_diag_particle_int (istep)
subroutine	diag_write_particles_adios (array_len, num, offset, total, phase, gid)

Function/Subroutine Documentation

subroutine background_edensity0_output	(	type(grid_type)	grid,
		type(psn_type)	psn
	)

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subroutine background_edensity0_read	(	type(grid_type)	grid,
		type(psn_type)	psn
	)

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subroutine check_adios_err	(	integer	err,
		character (len=*)	str
	)

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subroutine diag_1d_f0	(	type(grid_type)	grid,
		type(psn_type)	psn
	)

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subroutine diag_1d_output	(	type(grid_type)	grid,
		type(psn_type)	psn
	)

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subroutine diag_3d	(	integer	istep,
		type(grid_type)	grid,
		type(psn_type)	psn
	)

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subroutine diag_3d_f0_f	(	integer	istep,
		real (8), dimension(-f0_nvp:f0_nvp, f0_inode1:f0_inode2, f0_imu1:f0_imu2, ptl_isp:ptl_nsp), intent(in)	f0_f
	)

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subroutine diag_3d_store_field

(

)

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subroutine diag_f0	(	integer	istep,
		real (8), dimension(-f0_nvp:f0_nvp, f0_inode1:f0_inode2, f0_imu1:f0_imu2, ptl_isp:ptl_nsp), intent(inout)	f0_f,
		real (8), dimension(-f0_nvp:f0_nvp, f0_inode1:f0_inode2, f0_imu1:f0_imu2, ptl_isp:ptl_nsp), intent(inout)	f0_n,
		real (8), dimension(f0_inode1:f0_inode2,0:grid_global%nrho(main_ion_type)), intent(inout)	iden_rho_f0,
		real (8), dimension(f0_inode1:f0_inode2), intent(inout)	eden_f0
	)

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subroutine diag_f0_df	(	integer, intent(in)	istep,
		type(grid_type)	grid
	)

Outputs density, momentum and enery change due to sources (collision, neutrals, etc.) Currently, each source step is written out even if a source is not active. It would be possible to skip the output for inactive source routines to reduce the size of output files.

Parameters

[in]	istep	time step index, integer
[in]	grid	information, type(grid_type)

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subroutine diag_f0_df_port1	(	integer, intent(in)	idx,
		type(grid_type), intent(in)	grid,
		type(species_type), dimension(0:ptl_nsp_max), intent(in)	spall,
		real (8), dimension(-f0_nvp:f0_nvp, f0_inode1:f0_inode2, f0_imu1:f0_imu2, ptl_isp:ptl_nsp), intent(in)	f0_f,
		real (8), dimension(-f0_nvp:f0_nvp, f0_inode1:f0_inode2, f0_imu1:f0_imu2, ptl_isp:ptl_nsp), intent(in)	f0_df0g
	)

Save change of densiy, energy and momentum due to sources (collisions, neutrals, etc.) The information is gathered on the triangular grid and averaged over the toroidal direction. Extension to 3D output with toroidal resolution is possible.

Parameters

[in]	idx	mode selector: 0) Particle moments before source routines, 1) collision, 2) diffusion (XGCa only), 3) heat-torque, 4) neutral, 5) pellet ablation, 6) radiation, 7) particle moments after source routines, integer
[in]	grid	grid informationm, type(grid_type)
[in]	spall	particle data, type(species_type)

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subroutine diag_heat_output

(

)

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subroutine diag_sheath

(

type(grid_type)

grid

)

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subroutine diag_write_particles_adios	(	integer, intent(in)	array_len,
		integer, dimension(ptl_isp:ptl_nsp)	num,
		integer(8), dimension(ptl_isp:ptl_nsp)	offset,
		integer(8), dimension(ptl_isp:ptl_nsp)	total,
		real(4), dimension(ptl_nphase+ptl_nconst, array_len, ptl_isp:ptl_nsp)	phase,
		integer(8), dimension(array_len, ptl_isp:ptl_nsp)	gid
	)

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subroutine diagnosis	(	integer, intent(in)	istep,
		integer, intent(in)	irk,
		type(grid_type)	grid,
		type(psn_type)	psn,
		type(species_type), dimension(0:ptl_nsp_max)	spall
	)

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integer function do_diag_particle_int

(

integer, intent(in)

istep

)

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subroutine dump_bfield

(

type(grid_type)

grid

)

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subroutine dump_f0_grid

(

type(grid_type)

grid

)

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subroutine dump_grid	(	type(grid_type)	grid,
		type(psn_type)	psn
	)

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subroutine dump_poincare_init	(	type(grid_type), intent(in)	grid,
		type(psn_type), intent(in)	psn
	)

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integer function get_diag_particle_mod

(

)

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subroutine get_drift_velocity	(	type(grid_type), intent(in)	grid,
		type(psn_type), intent(in)	psn,
		integer, intent(in)	node,
		real (kind=8), intent(in)	mu,
		real (kind=8), intent(in)	vp,
		integer, intent(in)	isp,
		real (kind=8), intent(in)	v_th,
		real (kind=8), dimension(3), intent(out)	v_mag,
		real (kind=8), dimension(3), intent(out)	v_exb,
		real (kind=8), dimension(3), intent(out)	v_pardrift,
		real (kind=8), intent(out)	pot_rho,
		real (kind=8), intent(out)	grad_psi_sqr
	)

Evaluates the drift velocities at given inode, imu, ivp The basic magnetic field quantities necessary for the calculation of the magnetic drifts are stored in the grid data structure. To save memory, this could also be shifted to f0_module.

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subroutine jpar_backgnd_bicub	(	real(kind=8), intent(in)	r,
		real(kind=8), intent(in)	z,
		real(kind=8), intent(out)	jpar
	)

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subroutine save_as_adios_format

(

)

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