Index

A

adiabatic (xgc_analysis.analysis.moments.distribution.SplitMoment attribute) AdiosFileSourceReader (class in xgc_analysis.data_access.adios.adios_file_reader) AnalysisHooks (class in xgc_analysis.analysis.divertor.eich) AnalyticDiffusionProfiles (class in Diffusion_Optimizer.AnalyticDiffusionProfiles) apply_fieldline_mapping() (xgc_analysis.mesh.mesh.Mesh method) (xgc_analysis.mesh.mesh_data.MeshData method)

ArrayAccessorMixin (class in xgc_analysis.data_access.products.accessor_mixin) available_samples() (xgc_analysis.data_access.products.diffusion_data.DiffusionProfileData method) available_source_terms() (in module xgc_analysis.analysis.sources.diagnostics) available_step_count() (in module xgc_analysis.data_access.adios.adios_file_reader) available_steps() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) available_steps_count_for_variable() (in module xgc_analysis.data_access.adios.adios_file_reader) available_variable_names() (in module xgc_analysis.data_access.adios.adios_file_reader)

B

BalanceComparison (class in xgc_analysis.analysis.sources.balance) basic (xgc_analysis.analysis.moments.distribution.F0MomentResult attribute) bfield (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) bpol_midplane_t (xgc_analysis.analysis.divertor.eich.DivertorWidthScalings attribute) BPReaderMixin (class in xgc_analysis.data_access.products.bp_reader_mixin) build_deposition_shapes() (in module xgc_analysis.species.prescribed_profiles)

build_from_surf_map() (xgc_analysis.mesh.sol_wall_mapping.SOLWallVolumeMap method) build_last_occurrence_step_mask() (in module xgc_analysis.time_step_utils) build_line_fsa_matrix() (xgc_analysis.mesh.plane.Plane method) build_prescribed_profile() (in module xgc_analysis.species.prescribed_profiles) build_run_prescribed_profiles() (in module xgc_analysis.species.species) build_static_buffer() (in module xgc_analysis.data_access.catalog.static_product_reader)

C

calculate_flux_surface_area() (xgc_analysis.mesh.plane.Plane method) campaign_state_key() (in module xgc_analysis.data_access.catalog.campaign_catalog) CampaignSourceReader (class in xgc_analysis.data_access.catalog.campaign_source_reader) chang_mm (xgc_analysis.analysis.divertor.eich.DivertorWidthScalings attribute) channel (xgc_analysis.analysis.divertor.eich.DivertorLoadMap attribute) charge_C (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) check_cancel (xgc_analysis.analysis.divertor.eich.AnalysisHooks attribute) circular_distance() (xgc_analysis.mesh.wall_curve.WallCurve method) classify_product() (in module xgc_analysis.data_access.catalog.directory_catalog) close() (Diffusion_Optimizer.DiffusionCoefficients.DiffusionCoefficients method) (Diffusion_Optimizer.DiffusionProfiles.DiffusionProfiles method) (xgc_analysis.data_access.adios.adios_file_reader.AdiosFileSourceReader method) (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) COEFFICIENT_NAMES (xgc_analysis.data_access.products.diffusion_data.DiffusionCoefficientData attribute) CombinedTransportResult (class in xgc_analysis.analysis.transport.combined_coefficients) compare_f0_moments_to_fmoment() (in module xgc_analysis.analysis.moments.distribution) compare_particle_energy_balance() (in module xgc_analysis.analysis.sources.balance) compare_particle_fueling_sources() (in module xgc_analysis.analysis.sources.balance) compare_potential_gradient() (in module xgc_analysis.analysis.transport.potential_gradient) compare_transport_coefficients() (in module xgc_analysis.analysis.transport.coefficient_comparison)

component (xgc_analysis.analysis.divertor.eich.DivertorLoadMap attribute) compute() (xgc_analysis.analysis.moments.distribution.F0MomentCalculator method) compute_background_field() (xgc_analysis.magnetic_equilibrium.magnetic_field.MagneticField method) compute_combined_transport_coefficients() (in module xgc_analysis.analysis.transport.combined_coefficients) compute_core_sol_geometry_blocks() (xgc_analysis.mesh.plane.Plane method) compute_divertor_eich_profiles() (in module xgc_analysis.analysis.divertor.eich) compute_divertor_lambda_q_timeseries() (in module xgc_analysis.analysis.divertor.eich) compute_divertor_load_map() (in module xgc_analysis.analysis.divertor.eich) compute_divertor_target_totals_timeseries() (in module xgc_analysis.analysis.divertor.eich) compute_f0_moments() (xgc_analysis.data_access.products.distribution_function_data.DistributionFunctionField method) compute_fieldline_mapping() (in module xgc_analysis.mesh.fieldline_mapping) (in module xgc_analysis.mesh.fieldline_mapping2) compute_mesh_slice_time_map() (in module xgc_analysis.analysis.slicing.mesh_time_slicing) compute_neoclassical_transport() (in module xgc_analysis.analysis.transport.neoclassical) compute_sol_wall_loss_rates() (in module xgc_analysis.analysis.divertor.wall_loss_rates) compute_source_rates() (in module xgc_analysis.analysis.sources.diagnostics) convert_fortran_value() (xgc_analysis.simulation.simulation.Simulation method) coordinate (xgc_analysis.analysis.slicing.mesh_time_slicing.MeshSliceTimeMap attribute) current_drive (xgc_analysis.analysis.transport.neoclassical.NeoResult attribute) curves (xgc_analysis.analysis.transport.combined_coefficients.CombinedTransportResult attribute)

D

d_dpsi() (xgc_analysis.data_access.products.oneddiag.OneDDiag method) data (xgc_analysis.data_access.products.oneddiag.OneDDiag attribute) (xgc_analysis.data_access.products.sheath_data.SheathData attribute) dbim (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) dbre (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) DEFAULT_IGNORED_VARS (xgc_analysis.data_access.products.distribution_function_data.DistributionFunctionData attribute) DEFAULT_VARS (xgc_analysis.data_access.products.heatdiag.HeatDiag attribute) delta_b (xgc_analysis.analysis.moments.distribution.FluxSplit attribute) den_node_m3 (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) density (xgc_analysis.analysis.moments.distribution.F0BasicMoments attribute) DepositionShape (class in xgc_analysis.species.prescribed_profiles) derived_data (xgc_analysis.data_access.products.oneddiag.OneDDiag attribute) describe() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) DiffusionCoefficientData (class in xgc_analysis.data_access.products.diffusion_data) DiffusionCoefficients (class in Diffusion_Optimizer.DiffusionCoefficients)

DiffusionProfileData (class in xgc_analysis.data_access.products.diffusion_data) DiffusionProfiles (class in Diffusion_Optimizer.DiffusionProfiles) directory_state_key() (in module xgc_analysis.data_access.catalog.directory_catalog) discover_campaign_products() (in module xgc_analysis.data_access.catalog.campaign_catalog) discover_directory_products() (in module xgc_analysis.data_access.catalog.directory_catalog) distribution_variables() (xgc_analysis.data_access.products.distribution_function_data.DistributionFunctionData method) DistributionFunctionData (class in xgc_analysis.data_access.products.distribution_function_data) DistributionFunctionField (class in xgc_analysis.data_access.products.distribution_function_data) DivertorEichProfile (class in xgc_analysis.analysis.divertor.eich) DivertorLambdaQPoint (class in xgc_analysis.analysis.divertor.eich) DivertorLoadMap (class in xgc_analysis.analysis.divertor.eich) DivertorTargetTotalsPoint (class in xgc_analysis.analysis.divertor.eich) DivertorWidthScalings (class in xgc_analysis.analysis.divertor.eich) dpot (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) drift (xgc_analysis.analysis.moments.distribution.FluxSplit attribute) dt (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute)

E

echarge (xgc_analysis.data_access.products.oneddiag.OneDDiag attribute) eich_mm (xgc_analysis.analysis.divertor.eich.DivertorWidthScalings attribute) eich_model() (in module xgc_analysis.analysis.divertor.eich) energy_e (xgc_analysis.analysis.divertor.eich.DivertorEichProfile attribute) energy_i (xgc_analysis.analysis.divertor.eich.DivertorEichProfile attribute) energy_rate_e (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) energy_rate_e_avg (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) energy_rate_i (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) energy_rate_i_avg (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) epsi (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) estimate_divertor_width_scalings() (in module xgc_analysis.analysis.divertor.eich) etheta (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) evaluate_full_gradients() (xgc_analysis.mesh.mesh_data.MeshData method) evaluate_grad_par() (xgc_analysis.mesh.mesh.Mesh method) (xgc_analysis.mesh.mesh_data.MeshData method)

evaluate_input_profile() (xgc_analysis.species.species.Species method) evaluate_raw() (xgc_analysis.species.prescribed_profiles.PrescribedProfile method) evaluate_scalar_gradients() (xgc_analysis.mesh.mesh.Mesh method) (xgc_analysis.mesh.mesh_data.MeshData method) (xgc_analysis.mesh.plane.Plane method) (xgc_analysis.mesh.plane_data.PlaneData method) evaluate_weight() (xgc_analysis.species.prescribed_profiles.DepositionShape method) evaluate_with_region() (xgc_analysis.species.prescribed_profiles.PrescribedProfile method) evaluate_xgc_profile() (xgc_analysis.species.species.Species method) exb (xgc_analysis.analysis.moments.distribution.FluxSplit attribute) export_vtu() (xgc_analysis.data_access.products.field_data.FieldData method) (xgc_analysis.data_access.products.fmoment_data.FMomentData method) extract_component() (xgc_analysis.mesh.mesh_data.MeshData method) (xgc_analysis.mesh.plane_data.PlaneData method)

F

F0BasicMoments (class in xgc_analysis.analysis.moments.distribution) F0MomentCalculator (class in xgc_analysis.analysis.moments.distribution) F0MomentComponent (class in xgc_analysis.analysis.moments.distribution) F0MomentInputs (class in xgc_analysis.analysis.moments.distribution) F0MomentResult (class in xgc_analysis.analysis.moments.distribution) f_3d_im (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) f_3d_re (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) ff_map_real2ff() (xgc_analysis.mesh.mesh.Mesh method) (xgc_analysis.mesh.mesh_data.MeshData method) FieldData (class in xgc_analysis.data_access.products.field_data) FileWaiter (class in xgc_analysis.utils.file_waiter) find_z0_crossings() (xgc_analysis.mesh.wall_curve.WallCurve method) finite_pair_count() (in module xgc_analysis.analysis.geometry) fit_eich_profile() (in module xgc_analysis.analysis.divertor.eich) fit_energy (xgc_analysis.analysis.divertor.eich.DivertorEichProfile attribute) fit_particle (xgc_analysis.analysis.divertor.eich.DivertorEichProfile attribute) flux_avg_from_surf() (xgc_analysis.mesh.mesh.Mesh method) (xgc_analysis.mesh.mesh_data.MeshData method) (xgc_analysis.mesh.plane.Plane method) (xgc_analysis.mesh.plane_data.PlaneData method)

flux_avg_to_from_surf() (xgc_analysis.mesh.mesh.Mesh method) (xgc_analysis.mesh.mesh_data.MeshData method) (xgc_analysis.mesh.plane.Plane method) (xgc_analysis.mesh.plane_data.PlaneData method) flux_avg_to_surf() (xgc_analysis.mesh.mesh.Mesh method) (xgc_analysis.mesh.mesh_data.MeshData method) (xgc_analysis.mesh.plane.Plane method) (xgc_analysis.mesh.plane_data.PlaneData method) flux_avg_to_surf_norm() (xgc_analysis.mesh.mesh.Mesh method) (xgc_analysis.mesh.mesh_data.MeshData method) (xgc_analysis.mesh.plane.Plane method) (xgc_analysis.mesh.plane_data.PlaneData method) flux_surface_avg_project (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) flux_surface_overlay_paths() (in module xgc_analysis.analysis.slicing.mesh_slicing) flux_surface_profile() (in module xgc_analysis.analysis.slicing.mesh_slicing) FluxSplit (class in xgc_analysis.analysis.moments.distribution) FMomentData (class in xgc_analysis.data_access.products.fmoment_data) from_simulation() (xgc_analysis.analysis.moments.distribution.F0MomentInputs class method) from_species() (xgc_analysis.analysis.moments.distribution.F0MomentInputs class method) fsa (xgc_analysis.analysis.transport.neoclassical.NeoResult attribute) FsourceData (class in xgc_analysis.data_access.products.fsource_data)

G

GARBAGE_BIN_VARS (xgc_analysis.data_access.products.heatdiag.HeatDiag attribute) gen_ff2real_mapping() (xgc_analysis.mesh.plane.Plane method) get_array() (xgc_analysis.data_access.products.accessor_mixin.ArrayAccessorMixin method) get_as() (xgc_analysis.data_access.products.accessor_mixin.ArrayAccessorMixin method) get_coefficient() (xgc_analysis.data_access.products.diffusion_data.DiffusionCoefficientData method) get_csr_matrix() (xgc_analysis.mesh.csr_matrix.SparseMatrixCSR method) get_data() (xgc_analysis.data_access.products.distribution_function_data.DistributionFunctionField method) (xgc_analysis.mesh.mesh_data.MeshData method) (xgc_analysis.mesh.plane_data.PlaneData method) get_derived_array() (xgc_analysis.data_access.products.oneddiag.OneDDiag method) get_derived_item() (xgc_analysis.data_access.products.oneddiag.OneDDiag method) get_distribution() (xgc_analysis.data_access.products.distribution_function_data.DistributionFunctionData method) get_element_name_by_mass() (in module xgc_analysis.species.periodic_table) get_field() (xgc_analysis.data_access.products.field_data.FieldData method) (xgc_analysis.data_access.products.loop_voltage_data.LoopVoltageData method) get_heat_array() (xgc_analysis.data_access.products.heatdiag.HeatDiag method) get_item() (xgc_analysis.data_access.products.accessor_mixin.ArrayAccessorMixin method) get_mesh_data() (xgc_analysis.data_access.products.distribution_function_data.DistributionFunctionData method) (xgc_analysis.data_access.products.field_data.FieldData method) (xgc_analysis.data_access.products.fmoment_data.FMomentData method) (xgc_analysis.data_access.products.neutral_data.NeutralData method) get_moment() (xgc_analysis.data_access.products.fmoment_data.FMomentData method) get_neutral_field() (xgc_analysis.data_access.products.neutral_data.NeutralData method) get_plane() (xgc_analysis.mesh.mesh.Mesh method) (xgc_analysis.mesh.mesh_data.MeshData method) get_plane_data() (xgc_analysis.data_access.products.distribution_function_data.DistributionFunctionData method) (xgc_analysis.data_access.products.field_data.FieldData method) (xgc_analysis.data_access.products.fmoment_data.FMomentData method) (xgc_analysis.data_access.products.fsource_data.FsourceData method) (xgc_analysis.data_access.products.loop_voltage_data.LoopVoltageData method) (xgc_analysis.data_access.products.neutral_data.NeutralData method) get_product() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) get_profile() (xgc_analysis.data_access.products.diffusion_data.DiffusionProfileData method) (xgc_analysis.data_access.products.oneddiag.OneDDiag method) get_psi_surface_index_map() (xgc_analysis.mesh.plane.Plane method)

get_scalar() (xgc_analysis.data_access.products.diffusion_data.DiffusionCoefficientData method) (xgc_analysis.data_access.products.distribution_function_data.DistributionFunctionData method) (xgc_analysis.data_access.products.field_data.FieldData method) (xgc_analysis.data_access.products.fmoment_data.FMomentData method) (xgc_analysis.data_access.products.fsource_data.FsourceData method) (xgc_analysis.data_access.products.heatdiag.HeatDiag method) (xgc_analysis.data_access.products.loop_voltage_data.LoopVoltageData method) (xgc_analysis.data_access.products.neutral_data.NeutralData method) (xgc_analysis.data_access.products.oneddiag.OneDDiag method) (xgc_analysis.data_access.products.sheath_data.SheathData method) get_sheath_array() (xgc_analysis.data_access.products.sheath_data.SheathData method) get_source() (xgc_analysis.data_access.products.fsource_data.FsourceData method) get_species_by_prefix() (xgc_analysis.data_access.products.oneddiag.OneDDiag method) get_species_view() (xgc_analysis.data_access.products.oneddiag.OneDDiag method) get_static_array() (xgc_analysis.data_access.products.oneddiag.OneDDiag method) get_step_info() (xgc_analysis.data_access.products.bp_reader_mixin.BPReaderMixin method) (xgc_analysis.data_access.products.diffusion_data.DiffusionCoefficientData method) (xgc_analysis.data_access.products.diffusion_data.DiffusionProfileData method) get_surface_indices() (xgc_analysis.mesh.plane.Plane method) get_surface_lengths() (xgc_analysis.mesh.plane.Plane method) get_surface_properties() (xgc_analysis.mesh.plane.Plane method) get_surface_vertex_indices() (xgc_analysis.mesh.plane.Plane method) get_time_mask() (xgc_analysis.data_access.products.heatdiag.HeatDiag method) (xgc_analysis.data_access.products.oneddiag.OneDDiag method) get_triangle_areas() (xgc_analysis.mesh.plane.Plane method) get_triangle_connectivity() (xgc_analysis.mesh.plane.Plane method) get_triangulation_data() (xgc_analysis.mesh.plane.Plane method) get_vertex_coordinates() (xgc_analysis.mesh.plane.Plane method) get_vertex_counts() (xgc_analysis.mesh.mesh.Mesh method) get_voronoi_volumes() (xgc_analysis.mesh.plane.Plane method) get_wall_array() (xgc_analysis.data_access.products.heatdiag.HeatDiag method) (xgc_analysis.data_access.products.sheath_data.SheathData method) get_wall_curve() (xgc_analysis.data_access.products.heatdiag.HeatDiag method) (xgc_analysis.mesh.mesh.Mesh method) (xgc_analysis.mesh.plane.Plane method) gradpsi (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute)

H

has_derived_var() (xgc_analysis.data_access.products.oneddiag.OneDDiag method) has_static_product() (in module xgc_analysis.data_access.catalog.static_product_reader)

has_text() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) has_var() (xgc_analysis.data_access.products.accessor_mixin.ArrayAccessorMixin method) HeatDiag (class in xgc_analysis.data_access.products.heatdiag)

I

indexed_value() (in module xgc_analysis.species.prescribed_profiles) integrate_over_velocity() (xgc_analysis.simulation.velocity_grid.VelocityGrid method) integration_weights_2d() (xgc_analysis.simulation.velocity_grid.VelocityGrid method) interp_radius_at_psi() (in module xgc_analysis.analysis.geometry) interp_radius_map() (in module xgc_analysis.analysis.geometry) interpolate_profile() (xgc_analysis.species.species.Species method)

interpolate_wall_loss_rates_to_surf_map() (in module xgc_analysis.analysis.divertor.wall_loss_rates) interval_mask_used (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) intervals (xgc_analysis.mesh.sol_wall_mapping.SOLVolumeWallBounds attribute) ion_name (xgc_analysis.analysis.divertor.eich.DivertorWidthScalings attribute) ion_temperature_ev (xgc_analysis.analysis.divertor.eich.DivertorWidthScalings attribute) is_axisymmetric_storage (xgc_analysis.data_access.products.distribution_function_data.DistributionFunctionField property) iter_stream_steps() (in module xgc_analysis.data_access.adios.adios_stream)

L

label (xgc_analysis.analysis.divertor.eich.DivertorEichProfile attribute) (xgc_analysis.analysis.divertor.eich.DivertorLambdaQPoint attribute) (xgc_analysis.analysis.divertor.eich.DivertorTargetTotalsPoint attribute) lambda_q_mm (xgc_analysis.analysis.divertor.eich.DivertorLambdaQPoint attribute) latest_step_data (Diffusion_Optimizer.DiffusionProfiles.DiffusionProfiles property) line_fsa_matrix (xgc_analysis.mesh.plane.Plane property) line_of_sight() (in module xgc_analysis.analysis.slicing.mesh_slicing) list_products() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) list_species() (xgc_analysis.data_access.products.oneddiag.OneDDiag method) list_step_indices() (xgc_analysis.data_access.products.accessor_mixin.ArrayAccessorMixin method)

list_texts() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) list_variables() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) list_vars() (xgc_analysis.data_access.products.accessor_mixin.ArrayAccessorMixin method) load_data() (xgc_analysis.data_access.products.oneddiag.OneDDiag method) load_data_from_catalog() (xgc_analysis.data_access.products.oneddiag.OneDDiag method) load_last_sample_history() (Diffusion_Optimizer.DiffusionProfiles.DiffusionProfiles class method) log_callback (xgc_analysis.analysis.divertor.eich.AnalysisHooks attribute) LoopVoltageData (class in xgc_analysis.data_access.products.loop_voltage_data) lower_surface (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) (xgc_analysis.mesh.sol_wall_mapping.SOLVolumeWallBounds attribute) lower_wall_nodes (xgc_analysis.mesh.sol_wall_mapping.SOLVolumeWallBounds attribute)

M

MagneticField (class in xgc_analysis.magnetic_equilibrium.magnetic_field) make_flux_surface_avg_projector() (xgc_analysis.analysis.moments.distribution.F0MomentInputs static method) mass_by_prefix (xgc_analysis.data_access.products.oneddiag.OneDDiag attribute) mass_kg (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) mean_parallel_flow (xgc_analysis.analysis.moments.distribution.F0BasicMoments attribute) Mesh (class in xgc_analysis.mesh.mesh) MeshData (class in xgc_analysis.mesh.mesh_data) MeshSliceTimeMap (class in xgc_analysis.analysis.slicing.mesh_time_slicing) midplane_radius_maps() (in module xgc_analysis.analysis.geometry) MINIMAL_INTERVAL_VARS (xgc_analysis.data_access.products.heatdiag.HeatDiag attribute) minor_radius_m (xgc_analysis.analysis.divertor.eich.DivertorWidthScalings attribute) missing_files() (xgc_analysis.utils.file_waiter.FileWaiter method) module xgc_analysis.analysis.divertor.eich xgc_analysis.analysis.divertor.plots xgc_analysis.analysis.divertor.wall_loss_rates xgc_analysis.analysis.geometry xgc_analysis.analysis.moments.distribution xgc_analysis.analysis.slicing.mesh_slicing xgc_analysis.analysis.slicing.mesh_time_slicing xgc_analysis.analysis.slicing.plotting xgc_analysis.analysis.sources.balance xgc_analysis.analysis.sources.diagnostics xgc_analysis.analysis.transport.coefficient_comparison xgc_analysis.analysis.transport.combined_coefficients xgc_analysis.analysis.transport.neoclassical xgc_analysis.analysis.transport.neoclassical_plots xgc_analysis.analysis.transport.neoclassical_workflow xgc_analysis.analysis.transport.potential_gradient xgc_analysis.constants xgc_analysis.data_access.adios.adios_file_reader xgc_analysis.data_access.adios.adios_stream xgc_analysis.data_access.adios.read_bp_file xgc_analysis.data_access.catalog.campaign_catalog xgc_analysis.data_access.catalog.campaign_source_reader xgc_analysis.data_access.catalog.directory_catalog xgc_analysis.data_access.catalog.static_product_reader xgc_analysis.data_access.products.accessor_mixin xgc_analysis.data_access.products.bp_reader_mixin xgc_analysis.data_access.products.diffusion_data xgc_analysis.data_access.products.distribution_function_data xgc_analysis.data_access.products.field_data xgc_analysis.data_access.products.fmoment_data xgc_analysis.data_access.products.fsource_data xgc_analysis.data_access.products.heatdiag xgc_analysis.data_access.products.loop_voltage_data xgc_analysis.data_access.products.neutral_data xgc_analysis.data_access.products.oneddiag xgc_analysis.data_access.products.sheath_data xgc_analysis.magnetic_equilibrium.magnetic_field xgc_analysis.mesh.csr_matrix xgc_analysis.mesh.fieldline_mapping xgc_analysis.mesh.fieldline_mapping2 xgc_analysis.mesh.mesh xgc_analysis.mesh.mesh_data xgc_analysis.mesh.plane xgc_analysis.mesh.plane_data xgc_analysis.mesh.plotting xgc_analysis.mesh.sol_wall_mapping xgc_analysis.mesh.wall_curve xgc_analysis.simulation.simulation xgc_analysis.simulation.velocity_grid xgc_analysis.species.periodic_table xgc_analysis.species.prescribed_profiles xgc_analysis.species.species xgc_analysis.time_step_utils xgc_analysis.utils.file_waiter

mu0 (xgc_analysis.data_access.products.oneddiag.OneDDiag attribute) mu_edge_factors() (xgc_analysis.simulation.velocity_grid.VelocityGrid method) mu_integration_weights() (xgc_analysis.simulation.velocity_grid.VelocityGrid method) multiply_left() (xgc_analysis.mesh.csr_matrix.SparseMatrixCSR method) multiply_transpose_left() (xgc_analysis.mesh.csr_matrix.SparseMatrixCSR method)

N

n0 (xgc_analysis.analysis.moments.distribution.F0MomentResult attribute) n_samples (Diffusion_Optimizer.DiffusionProfiles.DiffusionProfiles property) n_species (Diffusion_Optimizer.DiffusionProfiles.DiffusionProfiles property) n_surf (Diffusion_Optimizer.DiffusionProfiles.DiffusionProfiles property) n_vertices (xgc_analysis.mesh.wall_curve.WallCurve property)

nb_curl_nb (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) NeoResult (class in xgc_analysis.analysis.transport.neoclassical) NeutralData (class in xgc_analysis.data_access.products.neutral_data) node_slice() (xgc_analysis.data_access.products.distribution_function_data.DistributionFunctionField method) nonadiabatic (xgc_analysis.analysis.moments.distribution.SplitMoment attribute) nphi (xgc_analysis.data_access.products.distribution_function_data.DistributionFunctionField property)

O

OneDDiag (class in xgc_analysis.data_access.products.oneddiag) open_adios_stream() (in module xgc_analysis.data_access.adios.adios_stream) open_campaign_catalog() (in module xgc_analysis.data_access.catalog.campaign_catalog)

open_catalog() (in module xgc_analysis.data_access.catalog.directory_catalog) OPTIONAL_STATIC_BUFFER_PRODUCTS (xgc_analysis.simulation.simulation.Simulation attribute) OPTIONAL_VARIABLES (xgc_analysis.simulation.velocity_grid.VelocityGrid attribute) overview() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method)

P

parallel_energy_flux (xgc_analysis.analysis.moments.distribution.F0MomentComponent attribute) parallel_temperature (xgc_analysis.analysis.moments.distribution.F0BasicMoments attribute) particle_e (xgc_analysis.analysis.divertor.eich.DivertorEichProfile attribute) particle_e_rate_per_s (xgc_analysis.analysis.divertor.eich.DivertorTargetTotalsPoint attribute) particle_i (xgc_analysis.analysis.divertor.eich.DivertorEichProfile attribute) particle_i_rate_per_s (xgc_analysis.analysis.divertor.eich.DivertorTargetTotalsPoint attribute) particle_rate_e (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) particle_rate_e_avg (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) particle_rate_i (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) particle_rate_i_avg (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) particle_rate_per_s (xgc_analysis.analysis.divertor.eich.DivertorTargetTotalsPoint property) ParticleFuelingComparison (class in xgc_analysis.analysis.sources.balance) perpendicular_temperature (xgc_analysis.analysis.moments.distribution.F0BasicMoments attribute) phase_callback (xgc_analysis.analysis.divertor.eich.AnalysisHooks attribute) plan_read() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) Plane (class in xgc_analysis.mesh.plane) plane_slice() (xgc_analysis.data_access.products.distribution_function_data.DistributionFunctionField method) PlaneData (class in xgc_analysis.mesh.plane_data) plot1d_if() (xgc_analysis.data_access.products.oneddiag.OneDDiag method) plot_contour() (xgc_analysis.mesh.plane.Plane method) (xgc_analysis.mesh.plane_data.PlaneData method) plot_divertor_eich_profiles() (in module xgc_analysis.analysis.divertor.plots) plot_divertor_lambda_q_timeseries() (in module xgc_analysis.analysis.divertor.plots) plot_divertor_load_map() (in module xgc_analysis.analysis.divertor.plots) plot_divertor_target_totals_timeseries() (in module xgc_analysis.analysis.divertor.plots) plot_fieldline_contour() (xgc_analysis.mesh.plane.Plane method) plot_grid_contour() (in module xgc_analysis.mesh.plotting)

plot_mesh_slice() (in module xgc_analysis.analysis.slicing.plotting) plot_mesh_time_map() (in module xgc_analysis.analysis.slicing.plotting) plot_neoclassical_transport() (in module xgc_analysis.analysis.transport.neoclassical_plots) plot_rz_diagnostic() (in module xgc_analysis.analysis.slicing.plotting) plot_surfaces() (xgc_analysis.mesh.plane.Plane method) plot_triangles() (xgc_analysis.mesh.plane.Plane method) plot_vertices_with_wall() (xgc_analysis.mesh.plane.Plane method) points (xgc_analysis.mesh.wall_curve.WallCurve property) post_process() (xgc_analysis.data_access.products.oneddiag.OneDDiag method) PotentialGradientComparison (class in xgc_analysis.analysis.transport.potential_gradient) power_e_w (xgc_analysis.analysis.divertor.eich.DivertorTargetTotalsPoint attribute) power_i_w (xgc_analysis.analysis.divertor.eich.DivertorTargetTotalsPoint attribute) power_w (xgc_analysis.analysis.divertor.eich.DivertorTargetTotalsPoint property) PrescribedProfile (class in xgc_analysis.species.prescribed_profiles) product_names() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) PROFILE_VARIABLES (xgc_analysis.data_access.products.diffusion_data.DiffusionProfileData attribute) profiles (xgc_analysis.analysis.transport.neoclassical.NeoResult attribute) protmass (xgc_analysis.data_access.products.oneddiag.OneDDiag attribute) psi_center (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) psi_center_norm (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) psi_lower (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) (xgc_analysis.mesh.sol_wall_mapping.SOLVolumeWallBounds attribute) psi_n (xgc_analysis.analysis.sources.balance.ParticleFuelingComparison attribute) (xgc_analysis.analysis.transport.combined_coefficients.CombinedTransportResult attribute) psi_theta_slice() (in module xgc_analysis.analysis.slicing.mesh_slicing) psi_upper (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) (xgc_analysis.mesh.sol_wall_mapping.SOLVolumeWallBounds attribute)

Q

qualified_variable_name() (xgc_analysis.data_access.adios.adios_file_reader.AdiosFileSourceReader static method)

R

r (xgc_analysis.mesh.wall_curve.ZeroCrossing attribute) radial_energy_flux (xgc_analysis.analysis.moments.distribution.F0MomentComponent attribute) radial_particle_flux (xgc_analysis.analysis.moments.distribution.F0MomentComponent attribute) read_adios_file_steps() (in module xgc_analysis.data_access.adios.adios_file_reader) read_arrays() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) read_bp_file() (in module xgc_analysis.data_access.adios.read_bp_file) read_campaign_text() (in module xgc_analysis.data_access.catalog.campaign_catalog) read_from_campaign() (xgc_analysis.data_access.products.fmoment_data.FMomentData method) read_input_package_profile() (in module xgc_analysis.species.prescribed_profiles) read_next_step() (Diffusion_Optimizer.DiffusionProfiles.DiffusionProfiles method) read_profile_text() (in module xgc_analysis.species.prescribed_profiles) read_static_variables() (in module xgc_analysis.data_access.catalog.static_product_reader)

read_text() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) read_transp_particle_fueling() (in module xgc_analysis.analysis.sources.balance) read_transp_sources() (in module xgc_analysis.analysis.sources.balance) ReadBPFile() (in module xgc_analysis.data_access.adios.read_bp_file) refresh() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) refresh_if_changed() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) report_profiles() (xgc_analysis.data_access.products.oneddiag.OneDDiag method) REQUIRED_CATALOG_PRODUCTS (xgc_analysis.simulation.simulation.Simulation attribute) REQUIRED_CATALOG_TEXTS (xgc_analysis.simulation.simulation.Simulation attribute) REQUIRED_VARIABLES (xgc_analysis.simulation.velocity_grid.VelocityGrid attribute) required_vars (xgc_analysis.data_access.products.neutral_data.NeutralData attribute) Returns (xgc_analysis.data_access.products.sheath_data.SheathData attribute) run_neoclassical_transport() (in module xgc_analysis.analysis.transport.neoclassical_workflow)

S

s (xgc_analysis.mesh.wall_curve.ZeroCrossing attribute) s_mm (xgc_analysis.analysis.divertor.eich.DivertorLambdaQPoint attribute) s_vertex (xgc_analysis.mesh.wall_curve.WallCurve property) sample_count (xgc_analysis.analysis.transport.neoclassical.NeoResult attribute) SAMPLE_STEP_NAMES (xgc_analysis.data_access.products.diffusion_data.DiffusionProfileData attribute) save_neoclassical_svg_plots() (in module xgc_analysis.analysis.transport.neoclassical_plots) segment_index (xgc_analysis.mesh.wall_curve.ZeroCrossing attribute) segment_to_bin (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) select_interval_sample_indices() (in module xgc_analysis.time_step_utils) set_origin_at_inboard_midplane() (xgc_analysis.mesh.wall_curve.WallCurve method) setup_fieldline_mapping() (xgc_analysis.mesh.mesh.Mesh method) shape (xgc_analysis.simulation.velocity_grid.VelocityGrid property) SheathData (class in xgc_analysis.data_access.products.sheath_data) shortest_interval() (xgc_analysis.mesh.wall_curve.WallCurve method) sim_is_axisymmetric (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) Simulation (class in xgc_analysis.simulation.simulation) simulation (xgc_analysis.data_access.products.sheath_data.SheathData attribute) SimulationCatalog (class in xgc_analysis.data_access.catalog.directory_catalog) SOLVolumeWallBounds (class in xgc_analysis.mesh.sol_wall_mapping) SOLWallLossRatesResult (class in xgc_analysis.analysis.divertor.wall_loss_rates) SOLWallVolumeMap (class in xgc_analysis.mesh.sol_wall_mapping)

source (xgc_analysis.analysis.transport.neoclassical.NeoResult attribute) source_terms (xgc_analysis.analysis.sources.balance.BalanceComparison attribute) SourceRateResult (class in xgc_analysis.analysis.sources.diagnostics) sparse_matrix_reader() (in module xgc_analysis.mesh.csr_matrix) SparseMatrixCSR (class in xgc_analysis.mesh.csr_matrix) Species (class in xgc_analysis.species.species) species_by_prefix (xgc_analysis.data_access.products.oneddiag.OneDDiag attribute) species_index (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) SPECIES_PREFIXES (xgc_analysis.data_access.products.oneddiag.OneDDiag attribute) SPECIES_SUFFIXES (xgc_analysis.data_access.products.diffusion_data.DiffusionCoefficientData attribute) split_line_at_psi_minimum() (in module xgc_analysis.analysis.slicing.mesh_slicing) split_n0_turb (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) SplitMoment (class in xgc_analysis.analysis.moments.distribution) STATIC_BUFFER_REQUESTS (xgc_analysis.simulation.simulation.Simulation attribute) static_data (xgc_analysis.data_access.products.oneddiag.OneDDiag attribute) static_product_source_path() (in module xgc_analysis.data_access.catalog.static_product_reader) STATIC_VARS (xgc_analysis.data_access.products.heatdiag.HeatDiag attribute) step (xgc_analysis.analysis.divertor.eich.DivertorLambdaQPoint attribute) (xgc_analysis.analysis.divertor.eich.DivertorTargetTotalsPoint attribute) surface_lines() (in module xgc_analysis.analysis.slicing.mesh_slicing) surface_phi_slice() (in module xgc_analysis.analysis.slicing.mesh_slicing)

T

target_label (xgc_analysis.analysis.divertor.eich.DivertorLoadMap attribute) temp_node_ev (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) text_names() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) TIME_COORDINATES (xgc_analysis.data_access.products.loop_voltage_data.LoopVoltageData attribute) time_left (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) time_right (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) time_s (xgc_analysis.analysis.divertor.eich.DivertorLambdaQPoint attribute) (xgc_analysis.analysis.divertor.eich.DivertorTargetTotalsPoint attribute) TIME_VARS (xgc_analysis.data_access.products.heatdiag.HeatDiag attribute) (xgc_analysis.data_access.products.sheath_data.SheathData attribute)

to_summary() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) toroidal_average() (xgc_analysis.mesh.mesh.Mesh method) (xgc_analysis.mesh.mesh_data.MeshData method) total (xgc_analysis.analysis.moments.distribution.SplitMoment property) total_length (xgc_analysis.mesh.wall_curve.WallCurve property) transp_path (xgc_analysis.analysis.sources.balance.BalanceComparison attribute) (xgc_analysis.analysis.sources.balance.ParticleFuelingComparison attribute) (xgc_analysis.analysis.transport.coefficient_comparison.TransportCoefficientComparison attribute) TransportCoefficientComparison (class in xgc_analysis.analysis.transport.coefficient_comparison) TriangulationData (class in xgc_analysis.mesh.plane) turb (xgc_analysis.analysis.moments.distribution.F0MomentResult attribute)

U

upper_surface (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) (xgc_analysis.mesh.sol_wall_mapping.SOLVolumeWallBounds attribute)

upper_wall_nodes (xgc_analysis.mesh.sol_wall_mapping.SOLVolumeWallBounds attribute)

V

v_curv (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) v_gradb (xgc_analysis.analysis.moments.distribution.F0MomentInputs attribute) values (xgc_analysis.analysis.divertor.eich.DivertorLoadMap attribute) (xgc_analysis.analysis.slicing.mesh_time_slicing.MeshSliceTimeMap attribute) variable_names() (xgc_analysis.data_access.catalog.directory_catalog.SimulationCatalog method) velocity_integral() (xgc_analysis.data_access.products.distribution_function_data.DistributionFunctionField method)

velocity_integral_data() (xgc_analysis.data_access.products.distribution_function_data.DistributionFunctionField method) VelocityGrid (class in xgc_analysis.simulation.velocity_grid) view (xgc_analysis.analysis.divertor.eich.DivertorLoadMap attribute) volume_shell (xgc_analysis.analysis.divertor.wall_loss_rates.SOLWallLossRatesResult attribute) vp_edge_factors() (xgc_analysis.simulation.velocity_grid.VelocityGrid method) vp_integration_weights() (xgc_analysis.simulation.velocity_grid.VelocityGrid method)

W

wait() (xgc_analysis.utils.file_waiter.FileWaiter method) wait_for_files() (in module xgc_analysis.utils.file_waiter) wall_data (xgc_analysis.data_access.products.sheath_data.SheathData attribute) wall_phi (xgc_analysis.data_access.products.sheath_data.SheathData property) (xgc_analysis.mesh.mesh.Mesh property) wall_psi (xgc_analysis.data_access.products.sheath_data.SheathData property)

wall_rz (xgc_analysis.data_access.products.sheath_data.SheathData property) (xgc_analysis.mesh.mesh.Mesh property) (xgc_analysis.mesh.plane.Plane property) WallCurve (class in xgc_analysis.mesh.wall_curve) write_neoclassical_bp() (in module xgc_analysis.analysis.transport.neoclassical_workflow) write_to_file() (Diffusion_Optimizer.DiffusionCoefficients.DiffusionCoefficients method)

X

x_mm (xgc_analysis.analysis.divertor.eich.DivertorEichProfile attribute) (xgc_analysis.analysis.divertor.eich.DivertorLoadMap attribute) xgc_analysis.analysis.divertor.eich module xgc_analysis.analysis.divertor.plots module xgc_analysis.analysis.divertor.wall_loss_rates module xgc_analysis.analysis.geometry module xgc_analysis.analysis.moments.distribution module xgc_analysis.analysis.slicing.mesh_slicing module xgc_analysis.analysis.slicing.mesh_time_slicing module xgc_analysis.analysis.slicing.plotting module xgc_analysis.analysis.sources.balance module xgc_analysis.analysis.sources.diagnostics module xgc_analysis.analysis.transport.coefficient_comparison module xgc_analysis.analysis.transport.combined_coefficients module xgc_analysis.analysis.transport.neoclassical module xgc_analysis.analysis.transport.neoclassical_plots module xgc_analysis.analysis.transport.neoclassical_workflow module xgc_analysis.analysis.transport.potential_gradient module xgc_analysis.constants module xgc_analysis.data_access.adios.adios_file_reader module xgc_analysis.data_access.adios.adios_stream module xgc_analysis.data_access.adios.read_bp_file module xgc_analysis.data_access.catalog.campaign_catalog module xgc_analysis.data_access.catalog.campaign_source_reader module xgc_analysis.data_access.catalog.directory_catalog module xgc_analysis.data_access.catalog.static_product_reader module xgc_analysis.data_access.products.accessor_mixin module xgc_analysis.data_access.products.bp_reader_mixin module xgc_analysis.data_access.products.diffusion_data module

xgc_analysis.data_access.products.distribution_function_data module xgc_analysis.data_access.products.field_data module xgc_analysis.data_access.products.fmoment_data module xgc_analysis.data_access.products.fsource_data module xgc_analysis.data_access.products.heatdiag module xgc_analysis.data_access.products.loop_voltage_data module xgc_analysis.data_access.products.neutral_data module xgc_analysis.data_access.products.oneddiag module xgc_analysis.data_access.products.sheath_data module xgc_analysis.magnetic_equilibrium.magnetic_field module xgc_analysis.mesh.csr_matrix module xgc_analysis.mesh.fieldline_mapping module xgc_analysis.mesh.fieldline_mapping2 module xgc_analysis.mesh.mesh module xgc_analysis.mesh.mesh_data module xgc_analysis.mesh.plane module xgc_analysis.mesh.plane_data module xgc_analysis.mesh.plotting module xgc_analysis.mesh.sol_wall_mapping module xgc_analysis.mesh.wall_curve module xgc_analysis.simulation.simulation module xgc_analysis.simulation.velocity_grid module xgc_analysis.species.periodic_table module xgc_analysis.species.prescribed_profiles module xgc_analysis.species.species module xgc_analysis.time_step_utils module xgc_analysis.utils.file_waiter module

Y

y_values (xgc_analysis.analysis.divertor.eich.DivertorLoadMap attribute)

Z

ZeroCrossing (class in xgc_analysis.mesh.wall_curve)